Citrus sinensis Annotation Project (CAP): A Comprehensive Database for Sweet Orange Genome
Identifieur interne : 000C39 ( Main/Exploration ); précédent : 000C38; suivant : 000C40Citrus sinensis Annotation Project (CAP): A Comprehensive Database for Sweet Orange Genome
Auteurs : Jia Wang [République populaire de Chine] ; Dijun Chen [République populaire de Chine] ; Yang Lei [République populaire de Chine] ; Ji-Wei Chang [République populaire de Chine] ; Bao-Hai Hao [République populaire de Chine] ; Feng Xing [République populaire de Chine] ; Sen Li [République populaire de Chine] ; Qiang Xu [République populaire de Chine] ; Xiu-Xin Deng [République populaire de Chine] ; Ling-Ling Chen [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2014.
English descriptors
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Abstract
Url:
DOI: 10.1371/journal.pone.0087723
PubMed: 24489955
PubMed Central: 3905029
Affiliations:
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China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Ling Ling" sort="Chen, Ling Ling" uniqKey="Chen L" first="Ling-Ling" last="Chen">Ling-Ling Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, P.R. 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China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>School of Science, Huazhong Agricultural University, Wuhan, P.R. China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>School of Science, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Dijun" sort="Chen, Dijun" uniqKey="Chen D" first="Dijun" last="Chen">Dijun Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, P.R. China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Lei, Yang" sort="Lei, Yang" uniqKey="Lei Y" first="Yang" last="Lei">Yang Lei</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, P.R. China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Chang, Ji Wei" sort="Chang, Ji Wei" uniqKey="Chang J" first="Ji-Wei" last="Chang">Ji-Wei Chang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, P.R. China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Hao, Bao Hai" sort="Hao, Bao Hai" uniqKey="Hao B" first="Bao-Hai" last="Hao">Bao-Hai Hao</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, P.R. China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Xing, Feng" sort="Xing, Feng" uniqKey="Xing F" first="Feng" last="Xing">Feng Xing</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, P.R. China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Li, Sen" sort="Li, Sen" uniqKey="Li S" first="Sen" last="Li">Sen Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, P.R. China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Xu, Qiang" sort="Xu, Qiang" uniqKey="Xu Q" first="Qiang" last="Xu">Qiang Xu</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, P.R. China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Deng, Xiu Xin" sort="Deng, Xiu Xin" uniqKey="Deng X" first="Xiu-Xin" last="Deng">Xiu-Xin Deng</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, P.R. China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Ling Ling" sort="Chen, Ling Ling" uniqKey="Chen L" first="Ling-Ling" last="Chen">Ling-Ling Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, P.R. China</addr-line></nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan</wicri:regionArea><wicri:noRegion>Wuhan</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Citrus sinensis (genetics)</term><term>Databases, Genetic</term><term>Genome, Plant</term><term>Internet</term><term>Metabolic Networks and Pathways</term><term>Molecular Sequence Annotation</term><term>Molecular Sequence Data</term><term>Protein Interaction Maps</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus sinensis</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Databases, Genetic</term><term>Genome, Plant</term><term>Internet</term><term>Metabolic Networks and Pathways</term><term>Molecular Sequence Annotation</term><term>Molecular Sequence Data</term><term>Protein Interaction Maps</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Citrus</italic> is one of the most important and widely grown fruit crop with global production ranking firstly among all the fruit crops in the world. Sweet orange accounts for more than half of the <italic>Citrus</italic> production both in fresh fruit and processed juice. We have sequenced the draft genome of a double-haploid sweet orange (<italic>C. sinensis</italic> cv. Valencia), and constructed the <italic>Citrus sinensis</italic> annotation project (CAP) to store and visualize the sequenced genomic and transcriptome data. CAP provides GBrowse-based organization of sweet orange genomic data, which integrates <italic>ab initio</italic> gene prediction, EST, RNA-seq and RNA-paired end tag (RNA-PET) evidence-based gene annotation. Furthermore, we provide a user-friendly web interface to show the predicted protein-protein interactions (PPIs) and metabolic pathways in sweet orange. CAP provides comprehensive information beneficial to the researchers of sweet orange and other woody plants, which is freely available at <ext-link ext-link-type="uri" xlink:href="http://citrus.hzau.edu.cn/">http://citrus.hzau.edu.cn/</ext-link>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Arumuganathan, K" uniqKey="Arumuganathan K">K Arumuganathan</name></author><author><name sortKey="Earle, Ed" uniqKey="Earle E">ED Earle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Xu, Q" uniqKey="Xu Q">Q Xu</name></author><author><name sortKey="Chen, Ll" uniqKey="Chen L">LL Chen</name></author><author><name sortKey="Ruan, X" uniqKey="Ruan X">X Ruan</name></author><author><name sortKey="Chen, D" uniqKey="Chen D">D Chen</name></author><author><name sortKey="Zhu, A" uniqKey="Zhu A">A Zhu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kanehisa, 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Lopes</name></author><author><name sortKey="Franz, M" uniqKey="Franz M">M Franz</name></author><author><name sortKey="Kazi, F" uniqKey="Kazi F">F Kazi</name></author><author><name sortKey="Donaldson, Sl" uniqKey="Donaldson S">SL Donaldson</name></author><author><name sortKey="Morris, Q" uniqKey="Morris Q">Q Morris</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Finn, Rd" uniqKey="Finn R">RD Finn</name></author><author><name sortKey="Clements, J" uniqKey="Clements J">J Clements</name></author><author><name sortKey="Eddy, Sr" uniqKey="Eddy S">SR Eddy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lorenz, R" uniqKey="Lorenz R">R Lorenz</name></author><author><name sortKey="Bernhart, Sh" uniqKey="Bernhart S">SH Bernhart</name></author><author><name sortKey="Honer Zu Siederdissen, C" uniqKey="Honer Zu Siederdissen C">C Höner Zu Siederdissen</name></author><author><name sortKey="Tafer, H" uniqKey="Tafer H">H Tafer</name></author><author><name sortKey="Flamm, C" uniqKey="Flamm C">C Flamm</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Buchan, Dw" uniqKey="Buchan D">DW Buchan</name></author><author><name sortKey="Minneci, F" uniqKey="Minneci F">F Minneci</name></author><author><name sortKey="Nugent, Tc" uniqKey="Nugent T">TC Nugent</name></author><author><name sortKey="Bryson, K" uniqKey="Bryson K">K Bryson</name></author><author><name sortKey="Jones, Dt" uniqKey="Jones D">DT Jones</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lamesch, P" uniqKey="Lamesch P">P Lamesch</name></author><author><name sortKey="Berardini, Tz" uniqKey="Berardini T">TZ Berardini</name></author><author><name sortKey="Li, D" uniqKey="Li D">D Li</name></author><author><name sortKey="Swarbreck, D" uniqKey="Swarbreck D">D Swarbreck</name></author><author><name sortKey="Wilks, C" uniqKey="Wilks C">C Wilks</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Wang, Jia" sort="Wang, Jia" uniqKey="Wang J" first="Jia" last="Wang">Jia Wang</name></noRegion><name sortKey="Chang, Ji Wei" sort="Chang, Ji Wei" uniqKey="Chang J" first="Ji-Wei" last="Chang">Ji-Wei Chang</name><name sortKey="Chen, Dijun" sort="Chen, Dijun" uniqKey="Chen D" first="Dijun" last="Chen">Dijun Chen</name><name sortKey="Chen, Ling Ling" sort="Chen, Ling Ling" uniqKey="Chen L" first="Ling-Ling" last="Chen">Ling-Ling Chen</name><name sortKey="Deng, Xiu Xin" sort="Deng, Xiu Xin" uniqKey="Deng X" first="Xiu-Xin" last="Deng">Xiu-Xin Deng</name><name sortKey="Hao, Bao Hai" sort="Hao, Bao Hai" uniqKey="Hao B" first="Bao-Hai" last="Hao">Bao-Hai Hao</name><name sortKey="Lei, Yang" sort="Lei, Yang" uniqKey="Lei Y" first="Yang" last="Lei">Yang Lei</name><name sortKey="Li, Sen" sort="Li, Sen" uniqKey="Li S" first="Sen" last="Li">Sen Li</name><name sortKey="Wang, Jia" sort="Wang, Jia" uniqKey="Wang J" first="Jia" last="Wang">Jia Wang</name><name sortKey="Xing, Feng" sort="Xing, Feng" uniqKey="Xing F" first="Feng" last="Xing">Feng Xing</name><name sortKey="Xu, Qiang" sort="Xu, Qiang" uniqKey="Xu Q" first="Qiang" last="Xu">Qiang Xu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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